11.5 The Small and Large Intestines
The word intestine is derived from a Latin root meaning “internal,” and indeed, the two organs together nearly fill the interior of the abdominal cavity. In addition, called the small and large bowel, or colloquially the ‘guts’, they constitute the greatest mass and length of the gastrointestinal tract and, except for ingestion, perform all digestive system functions.
The Small Intestine
Chyme released from the stomach enters the small intestine, which is the primary digestive organ in the body. Not only is this where most digestion occurs, it is also where practically all absorption occurs. The small intestine is longer than the large intestine, however, has a relatively smaller diameter. In addition to its length, the folds and projections of the lining of the small intestine work to give it an enormous surface area, necessary for complex processes of digestion and absorption that occur within it.
Structure
The coiled tube of the small intestine is subdivided into three regions. From proximal (at the stomach) to distal, these are the duodenum, jejunum and ileum (Figure 11.16).
The shortest region is the duodenum, which begins at the pyloric sphincter. Just past the pyloric sphincter, it bends posteriorly behind the peritoneum, becoming retroperitoneal, and then makes a C-shaped curve around the head of the pancreas before ascending anteriorly again to return to the peritoneal cavity and join the jejunum.
Of particular interest is the hepatopancreatic ampulla (ampulla of Vater). Located in the duodenal wall, the ampulla marks the transition from the anterior portion of the gastrointestinal tract to the mid-region, and is where the bile duct (through which bile passes from the liver) and the main pancreatic duct (through which pancreatic juice passes from the pancreas) join. This ampulla opens into the duodenum at a tiny volcano-shaped structure called the major duodenal papilla. The hepatopancreatic sphincter (sphincter of Oddi) regulates the flow of both bile and pancreatic secretions from the ampulla into the duodenum.

The jejunum runs from the duodenum to the ileum. No clear demarcation exists between the jejunum and the final segment of the small intestine, the ileum.
The ileum is the longest part of the small intestine. It is thicker, more vascular, and has more developed mucosal folds than the jejunum. The ileum joins the caecum, the first portion of the large intestine, at the ileocaecal sphincter (or valve). The jejunum and ileum are tethered to the posterior abdominal wall by the mesentery. The large intestine frames these three parts of the small intestine.
Parasympathetic nerve fibres from the vagus nerve and sympathetic nerve fibres from the thoracic splanchnic nerve provide extrinsic innervation to the small intestine. The superior mesenteric artery is its main arterial supply. Veins run parallel to the arteries and drain into the superior mesenteric vein. Nutrient-rich blood from the small intestine is then carried to the liver via the hepatic portal vein.
Histology
The wall of the small intestine is composed of the same four layers typically present in the gastrointestinal system. However, three features of the mucosa and submucosa are unique. These features, which increase the absorptive surface area of the small intestine more than 600-fold, include circular folds, villi, and microvilli (Figure 11.17). These adaptations are most abundant in the proximal two-thirds of the small intestine, where most of the absorption occurs.

Circular folds
Also called plicae circulares, a circular fold resulting in a deep ridge in the mucosa and submucosa. Beginning near the proximal part of the duodenum and ending near the middle of the ileum, these folds facilitate absorption. Their shape causes the chyme to spiral, rather than move in a straight line, through the small intestine. Spiralling slows the movement of chyme and provides the time needed for nutrients to be fully absorbed.
Villi
Within the circular folds are small (0.5–1 mm long) hairlike vascularised projections called villi (singular = villus) that give the mucosa a furry texture. There are about 20 to 40 villi per square millimetre, increasing the surface area of the epithelium tremendously. The mucosal epithelium, primarily composed of absorptive cells, covers the villi. In addition to muscle and connective tissue to support its structure, each villus contains a capillary bed composed of one arteriole and one venule, as well as a lymphatic capillary called a lacteal. The breakdown products of carbohydrates and proteins (sugars and amino acids) can enter the bloodstream directly, but lipid breakdown products are absorbed by the lacteals and transported to the bloodstream via the lymphatic system.
Microvilli
As their name suggests, microvilli (singular = microvillus) are much smaller (1 µm) than villi. They are cylindrical apical surface extensions of the plasma membrane of the mucosa’s epithelial cells and are supported by microfilaments within those cells. Although their small size makes it difficult to see each microvillus, their combined microscopic appearance suggests a mass of bristles, which is termed the brush border. Fixed to the surface of the microvilli membranes are enzymes that finish digesting carbohydrates and proteins. There are an estimated 200 million microvilli per square millimetre of small intestine, expanding the surface area of the plasma membrane and thus greatly enhancing absorption.
Intestinal Glands
In addition to the three specialised absorptive features just discussed, the mucosa between the villi is dotted with deep crevices that each lead into a tubular intestinal gland (crypt of Lieberkühn), which is formed by cells that line the crevices. These produce intestinal juice, a slightly alkaline (pH 7.4 to 7.8) mixture of water and mucus. Each day, about 0.95 to 1.9 litres are secreted in response to the distention of the small intestine or the irritating effects of chyme on the intestinal mucosa.
The submucosa of the duodenum is the only site of the complex mucus-secreting duodenal glands (Brunner’s glands), which produce a bicarbonate-rich alkaline mucus that buffers the acidic chyme as it enters from the stomach.
Mechanical Digestion in the Small Intestine
The movement of intestinal smooth muscles includes both segmentation and a form of peristalsis called migrating motility complexes. The kind of peristaltic mixing waves seen in the stomach are not observed here.
If you could see into the small intestine when it was going through segmentation, it would look as if the contents were being shoved incrementally back and forth, as the rings of smooth muscle repeatedly contract and then relax. Segmentation in the small intestine does not force chyme through the tract. Instead, it combines the chyme with digestive secretions and pushes food particles against the mucosa to be absorbed. The duodenum is where the most rapid segmentation occurs, at a rate of about 12 times per minute. In the ileum, segmentations are only about eight times per minute (Figure 11.18).

When most of the chyme has been absorbed, the small intestinal wall becomes less distended. At this point, the localised segmentation process is replaced by transport movements. The duodenal mucosa secretes the hormone motilin, which initiates peristalsis in the form of a migrating motility complex. These complexes, which begin in the duodenum, force chyme through a short section of the small intestine and then stop. The next contraction begins a little bit farther down than the first, forces chyme a bit farther through the small intestine, then stops. These complexes move slowly down the small intestine, forcing chyme on the way, taking around 90 to 120 minutes to finally reach the end of the ileum. At this point, the process is repeated, starting in the duodenum.
The ileocaecal valve, a sphincter, is usually in a constricted state, but when motility in the ileum increases, this sphincter relaxes, allowing food residue to enter the first portion of the large intestine, the cecum. Relaxation of the ileocaecal sphincter is controlled by both nerves and hormones. First, digestive activity in the stomach provokes the gastroileal reflex, which increases the force of ileal segmentation. Second, the stomach releases the hormone gastrin, which enhances ileal motility, thus relaxing the ileocaecal sphincter. After chyme passes through, backward pressure helps close the sphincter, preventing backflow into the ileum. Because of this reflex, your lunch is completely emptied from your stomach and small intestine by the time you eat your dinner. It takes about three to five hours for all chyme to leave the small intestine.
Chemical Digestion in the Small Intestine
The digestion of proteins and carbohydrates, which partially occurs in the stomach, is completed in the small intestine with the aid of intestinal and pancreatic secretions. Lipids arrive in the intestine largely undigested, so much of the focus here is on lipid digestion, which is facilitated by bile and the enzyme pancreatic lipase.
Moreover, intestinal juice combines with pancreatic juice to provide a liquid medium that facilitates absorption. The intestine is also where most water is absorbed, via osmosis. The small intestine’s absorptive cells also synthesise digestive enzymes and then place them in the plasma membranes of the microvilli. This distinguishes the small intestine from the stomach; that is, enzymatic digestion occurs not only in the lumen, but also on the luminal surfaces of the mucosal cells.
For optimal chemical digestion, chyme must be delivered from the stomach slowly and in small amounts. This is because chyme from the stomach is typically hypertonic, and if large quantities were forced all at once into the small intestine, the resulting osmotic water loss from the blood into the intestinal lumen would result in potentially life-threatening low blood volume. In addition, continued digestion requires an upward adjustment of the low pH of stomach chyme, along with rigorous mixing of the chyme with bile and pancreatic secretions. Both processes take time, so the pumping action of the pylorus must be carefully controlled to prevent the duodenum from being overwhelmed with chyme.
The Large Intestine
The large intestine is the terminal part of the gastrointestinal tract. The primary function of this organ is to finish absorption of nutrients and water, synthesise certain vitamins, form faeces, and eliminate faeces from the body.
Structure
The large intestine runs from the appendix to the anus. It frames the small intestine on three sides. Despite its being about one-half as long as the small intestine, it is called large because it is more than twice the diameter of the small intestine.
Subdivisions
The large intestine is subdivided into four main regions: the caecum, the colon, the rectum, and the anus. The ileocaecal valve, located at the opening between the ileum and the large intestine, controls the flow of chyme from the small intestine to the large intestine.
Caecum
The first part of the large intestine is the caecum, a sac-like structure that is suspended inferior to the ileocaecal valve. It is about 6 cm long, receives the contents of the ileum, and continues the absorption of water and salts. The appendix (or vermiform appendix) is a winding tube that attaches to the caecum. Although the appendix contains lymphoid tissue, suggesting an immunologic function, this organ is considered vestigial. However, at least one recent report postulates a survival advantage conferred by the appendix: In diarrhoeal illness, the appendix may serve as a bacterial reservoir to repopulate the enteric bacteria for those surviving the initial phases of the illness. Moreover, its twisted anatomy provides a haven for the accumulation and multiplication of enteric bacteria.
Colon
The caecum blends seamlessly with the colon. Upon entering the colon, the food residue first travels up the ascending colon on the right side of the abdomen. At the inferior surface of the liver, the colon bends to form the right colic flexure (hepatic flexure) and becomes the transverse colon. The region defined as hindgut begins with the last third of the transverse colon and continues on. Food residue passing through the transverse colon travels across to the left side of the abdomen, where the colon angles sharply immediately inferior to the spleen, at the left colic flexure (splenic flexure). From there, food residue passes through the descending colon, which runs down the left side of the posterior abdominal wall. After entering the pelvis inferiorly, it becomes the s-shaped sigmoid colon, which extends medially to the midline (Figure 11.19). The ascending and descending colon, and the rectum (discussed next) are located in the retroperitoneum. The transverse and sigmoid colon are tethered to the posterior abdominal wall by the mesocolon.

Rectum
Food residue leaving the sigmoid colon enters the rectum in the pelvis, near the third sacral vertebra. The final 20.3 cm of the gastrointestinal tract, the rectum extends anterior to the sacrum and coccyx. Even though rectum is Latin for “straight,” this structure follows the curved contour of the sacrum and has three lateral bends that create a trio of internal transverse folds called the rectal valves. These valves help separate the faeces from gas to prevent the simultaneous passage of faeces and gas.
Anal Canal
Finally, food residue reaches the last part of the large intestine, the anal canal, which is located in the perineum, completely outside of the abdominopelvic cavity. This 3.8–5 cm long structure opens to the exterior of the body at the anus. The anal canal includes two sphincters. The internal anal sphincter is made of smooth muscle, and its contractions are involuntary. The external anal sphincter is made of skeletal muscle, which is under voluntary control. Except when defaecating, both usually remain closed.
Histology
There are several notable differences between the walls of the large and small intestines (Figure 11.20). For example, few enzyme-secreting cells are found in the wall of the large intestine, and there are no circular folds or villi. Other than in the anal canal, the mucosa of the colon is simple columnar epithelium made mostly of enterocytes (absorptive cells) and goblet cells. In addition, the wall of the large intestine has far more intestinal glands, which contain a vast population of enterocytes and goblet cells. These goblet cells secrete mucus that eases the movement of faeces and protects the intestine from the effects of the acids and gases produced by enteric microorganisms. The enterocytes absorb water and salts as well as vitamins produced by your intestinal microbiome.

Microbiome
Most microorganisms that enter the gastrointestinal tract are killed by lysozyme, defensins, HCl, or protein-digesting enzymes. However, trillions of microorganisms live within the large intestine and are referred to as the microbiome. Most of the more than 700 species of these microorganisms are non-pathogenic commensal organisms that cause no harm if they stay in the gut lumen. In fact, many facilitate chemical digestion and absorption, and some synthesis e certain vitamins, mainly biotin, pantothenic acid and vitamin K. Some are linked to increased immune response. A refined system prevents these bacteria from crossing the mucosal barrier. First, peptidoglycan, a component of bacterial cell walls, activates the release of chemicals by the mucosa’s epithelial cells, which draft immune cells, especially dendritic cells, into the mucosa. Dendritic cells open the tight junctions between epithelial cells and extend probes into the lumen to evaluate the microbial antigens. The dendritic cells with antigens then travel to neighbouring lymphoid follicles in the mucosa where T cells inspect for antigens. This process triggers an IgA-mediated response, if warranted, in the lumen that blocks the commensal organisms from infiltrating the mucosa and setting off a far greater, widespread systematic reaction.
Digestive Functions of the Large Intestine
The residue of chyme that enters the large intestine contains few nutrients except water, which is reabsorbed as the residue lingers in the large intestine, typically for 12 to 24 hours. Thus, it may not surprise you that the large intestine can be completely removed without significantly affecting digestive functioning. In severe cases of inflammatory bowel disease, the large intestine can be removed by a procedure known as a colectomy. Often, a new faecal pouch can be crafted from the small intestine and sutured to the anus, but if not, an ileostomy can be created by bringing the distal ileum through the abdominal wall, allowing the watery chyme to be collected in a bag-like adhesive appliance.
For example
If the waste matter moves too quickly through the intestines, not enough water is absorbed, and diarrhoea can result. This can be caused by the ingestion of foodborne pathogens.
Mechanical Digestion
In the large intestine, mechanical digestion begins when chyme moves from the ileum into the caecum, an activity regulated by the ileocaecal sphincter. After eating, peristalsis in the ileum forces chyme into the cecum. When the cecum is distended with chyme, contractions of the ileocaecal sphincter strengthen. Once chyme enters the caecum, colon movements begin.
Mechanical digestion in the large intestine includes a combination of three types of movements. The presence of food residues in the colon stimulates a slow-moving contraction. This type of movement involves sluggish segmentation, primarily in the transverse and descending colons. The second type of movement is peristalsis, which, in the large intestine, is slower than in the more proximal portions of the gastrointestinal tract. The third type is a mass movement. These strong waves start midway through the transverse colon and quickly force the contents toward the rectum. Mass movements usually occur three or four times per day, either while you eat or immediately afterward. Distension in the stomach and the breakdown products of digestion in the small intestine provoke the gastrocolic reflex, which increases motility, including mass movements, in the colon. Fibre in the diet both softens the stool and increases the power of colonic contractions, optimising the activities of the colon.
Chemical Digestion
Although the glands of the large intestine secrete mucus, they do not secrete digestive enzymes. Therefore, chemical digestion in the large intestine occurs exclusively because of microbiota of the colon. Through the process of saccharolytic fermentation, microorganisms break down some of the remaining carbohydrates. This results in the discharge of hydrogen, carbon dioxide, and methane gases that create flatus (gas) in the colon; flatulence is excessive flatus. Each day, up to 1500 mL of flatus is produced in the colon. More is produced when you eat foods such as beans, which are rich in otherwise indigestible sugars and complex carbohydrates like soluble dietary fibre.
Absorption, Faeces Formation and Defaecation
The small intestine absorbs about 90 percent of the ingested water (either as liquid or within solid food). The large intestine absorbs most of the remaining water, a process that converts the liquid chyme residue into semisolid faeces (“stool”). Faeces is composed of undigested food residues, unabsorbed digested substances, millions of bacteria and other microorganisms, old epithelial cells from the GI mucosa, inorganic salts, and enough water to let it pass smoothly out of the body. Of every 500 mL of food residue that enters the caecum each day, about 150 mL become faeces.
Faeces are eliminated through contractions of the rectal muscles. A voluntary procedure called Valsalva’s manoeuvre increases intra-abdominal pressure by contracting the diaphragm and abdominal wall muscles and closing the glottis. The process of defaecation begins when mass movements force faeces from the colon into the rectum, stretching the rectal wall and provoking the defaecation reflex, which eliminates faeces from the rectum. This parasympathetic reflex is mediated by the spinal cord. It contracts the sigmoid colon and rectum, relaxes the internal anal sphincter, and initially contracts the external anal sphincter. The presence of faeces in the anal canal sends a signal to the brain, which gives you the choice of voluntarily opening the external anal sphincter (defecating) or keeping it temporarily closed. If you decide to delay defecation, it takes a few seconds for the reflex contractions to stop and the rectal walls to relax. The next mass movement will trigger additional defecation reflexes until you defecate.
Case study
A 6-year-old domestic shorthair cat, Daphne, presented with abdominal enlargement, lethargy, and reduced appetite. Physical examination revealed a firm, distended abdomen, and diagnostic imaging confirmed severe colonic distension, consistent with megacolon. The condition developed due to chronic constipation, where delayed defaecation led to excessive water reabsorption, resulting in hard, dry stools and reduced motility. The case was managed with fluid therapy, stool softeners, prokinetic agents, and dietary modification. Enemas were administered under sedation to stimulate bowel movements and relieve the obstruction. Megacolon is a potentially irreversible condition requiring lifelong management or surgical intervention.
Big fat red cat by Sebastian Wallroth via Wikimedia Commons, CC-BY-2.0
Comparative Anatomy and Physiology of the GIT
Functional Caecum
The caecum in the rabbit, rat and guinea pig is greatly enlarged to provide a “fermentation vat” for micro-organisms to break down the cellulose plant cell walls. This is called a functional caecum (Figure 11.21). In the horse both the caecum and the colon are enlarged. As in the rumen, the large cellulose molecules are broken down to smaller molecules that can be absorbed. However, the position of the functional caecum after the main areas of digestion and absorption, means it is potentially less effective than the rumen. This means that the small molecules that are produced there can not be absorbed by the gut but pass out in the faeces. The rabbit and rodents (and foals) solve this problem by eating their own faeces so that they pass through the gut a second time and the products of cellulose digestion can be absorbed in the small intestine. Rabbits produce two kinds of faeces. Softer night-time faeces are eaten directly from the anus and the harder pellets you are probably familiar with, that have passed through the gut twice.
Figure 11.21 Rabbit GIT
GIT of Birds
Birds’ guts have important differences from mammals’ guts. Most obviously, birds have a beak instead of teeth. Beaks are much lighter than teeth and are an adaptation for flight. Imagine a bird trying to take off and fly with a whole set of teeth in its head! At the base of the oesophagus birds have a bag-like structure called a crop. In many birds the crop stores food before it enters the stomach, while in pigeons and doves glands in the crop secretes a special fluid called crop-milk which parent birds regurgitate to feed their young. The stomach is also modified and consists of two compartments. The first is the true stomach with muscular walls and enzyme secreting glands. The second compartment is the gizzard. In seed eating birds this has very muscular walls and contains pebbles swallowed by the bird to help grind the food. This is the reason why you must always supply a caged bird with grit. In birds of prey like the falcon the walls of the gizzard are much thinner and expand to accommodate large meals (Figure 11.22).
Figure 11.22 GIT of a bird.
Case study
This case highlights the One Health implications of coccidiosis, as poor biosecurity and environmental contamination can impact animal welfare, farm productivity, and antimicrobial use. Early detection and prevention are key to controlling outbreaks in commercial poultry systems.

Section Review
The three main regions of the small intestine are the duodenum, the jejunum, and the ileum. The small intestine is where digestion is completed and virtually all absorption occurs. These two activities are facilitated by structural adaptations that increase the mucosal surface area by 600-fold, including circular folds, villi, and microvilli. There are around 200 million microvilli per square millimetre of small intestine, which contain brush border enzymes that complete the digestion of carbohydrates and proteins. Combined with pancreatic juice, intestinal juice provides the liquid medium needed to further digest and absorb substances from chyme. The small intestine is also the site of unique mechanical digestive movements. Segmentation moves the chyme back and forth, increasing mixing and opportunities for absorption. Migrating motility complexes propel the residual chyme toward the large intestine.
The main regions of the large intestine are the caecum, the colon, and the rectum. The large intestine absorbs water and forms faeces and is responsible for defaecation. The microbiome aids in the breakdown of additional carbohydrate residue and synthesise certain vitamins. The mucosa of the large intestinal wall is generously endowed with goblet cells, which secrete mucus that eases the passage of faeces. The entry of faeces into the rectum activates the defaecation reflex.
Review Questions
Critical Thinking Questions
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